Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EED33271.1Phage-related protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (1007 aa)    
Predicted Functional Partners:
EED33270.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.915
EED33272.1
Hypothetical protein.
       0.773
NOR53_965
Hypothetical protein.
       0.773
EED31763.1
Glycolipid ABC exporter (DevE) family, permease protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.708
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
    
  0.688
EED31302.1
Putative RecF/RecN/SMC N terminal domain; [D] COG1196 Chromosome segregation ATPases.
  
     0.684
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
     
  0.675
recQ
[LKJ] COG0513 Superfamily II DNA and RNA helicases.
     
  0.675
EED31235.1
Conserved hypothetical protein; [E] COG1748 Saccharopine dehydrogenase and related proteins.
  
     0.641
dnaB_1
[L] COG0305 Replicative DNA helicase; overlaps another CDS with the same product name.
    
  0.586
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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