oadG protein (gamma proteobacterium NOR53) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

oadG

Oxaloacetate decarboxylase, gamma chain superfamily; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation. (81 aa)

Predicted Functional Partners:

oadB

0.993

oadA

0.969

NOR53_376

0.729

EED33454.1

0.726

EED33502.1

0.667

EED33153.1

0.661

EED32676.1

0.637

NOR53_248

0.628

pyk

0.612

mdh

0.596

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED32676.1	EED33454.1	NOR53_1830	NOR53_2282	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	0.853
EED32676.1	EED33502.1	NOR53_1830	NOR53_2116	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	Cysteine-rich domain protein; [C] COG0247 Fe-S oxidoreductase.	0.688
EED32676.1	NOR53_376	NOR53_1830	NOR53_376	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.891
EED32676.1	mdh	NOR53_1830	NOR53_2273	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.	0.818
EED32676.1	oadA	NOR53_1830	NOR53_1515	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	Oxaloacetate decarboxylase alpha subunit; [I] COG0511 Biotin carboxyl carrier protein.	0.896
EED32676.1	oadB	NOR53_1830	NOR53_860	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	Oxaloacetate decarboxylase, beta subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the GcdB/MmdB/OadB family.	0.914
EED32676.1	oadG	NOR53_1830	NOR53_1997	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	Oxaloacetate decarboxylase, gamma chain superfamily; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.	0.637
EED32676.1	pyk	NOR53_1830	NOR53_3664	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	[G] COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.	0.544
EED33153.1	NOR53_248	NOR53_1446	NOR53_248	Conserved hypothetical protein.	Conserved hypothetical protein.	0.762
EED33153.1	oadG	NOR53_1446	NOR53_1997	Conserved hypothetical protein.	Oxaloacetate decarboxylase, gamma chain superfamily; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.	0.661
EED33454.1	EED32676.1	NOR53_2282	NOR53_1830	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	0.853
EED33454.1	EED33502.1	NOR53_2282	NOR53_2116	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	Cysteine-rich domain protein; [C] COG0247 Fe-S oxidoreductase.	0.834
EED33454.1	NOR53_376	NOR53_2282	NOR53_376	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.890
EED33454.1	mdh	NOR53_2282	NOR53_2273	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.	0.920
EED33454.1	oadA	NOR53_2282	NOR53_1515	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	Oxaloacetate decarboxylase alpha subunit; [I] COG0511 Biotin carboxyl carrier protein.	0.843
EED33454.1	oadB	NOR53_2282	NOR53_860	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	Oxaloacetate decarboxylase, beta subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the GcdB/MmdB/OadB family.	0.812
EED33454.1	oadG	NOR53_2282	NOR53_1997	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	Oxaloacetate decarboxylase, gamma chain superfamily; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.	0.726
EED33454.1	pyk	NOR53_2282	NOR53_3664	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	[G] COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.	0.923
EED33502.1	EED32676.1	NOR53_2116	NOR53_1830	Cysteine-rich domain protein; [C] COG0247 Fe-S oxidoreductase.	Putative methylmalonyl-CoA decarboxylasealpha-subunit; [I] COG0825 Acetyl-CoA carboxylase alpha subunit.	0.688
EED33502.1	EED33454.1	NOR53_2116	NOR53_2282	Cysteine-rich domain protein; [C] COG0247 Fe-S oxidoreductase.	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	0.834