Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED34011.1[T] COG2199 FOG: GGDEF domain. (540 aa)    
Predicted Functional Partners:
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
 
 0.967
EED31191.1
[T] COG2200 FOG: EAL domain.
 
 
 0.961
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.959
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.956
NOR53_559
Diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s); [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins.
 
0.922
EED32335.1
Hypothetical protein; [T] COG2200 FOG: EAL domain; pas:ggdef.
 
0.920
NOR53_724
Hypothetical protein; [T] COG2200 FOG: EAL domain; pas:ggdef.
 
0.920
EED34033.1
CheB methylesterase/CheR methyltransferase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
  
 
 0.868
EED32586.1
Adenylate cyclase 1 (ATP pyrophosphate-lyase 1); [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
 0.859
NOR53_690
Hypothetical protein.
  
 
 0.829
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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