Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED33468.1Transporter, OMR family; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport. (805 aa)    
Predicted Functional Partners:
EED31888.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.790
EED31474.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
  0.765
EED33993.1
Methyltransferase type 11; [R] COG4798 Predicted methyltransferase.
  
     0.638
EED33190.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.625
EED33189.1
Putative TonB-dependent receptor; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.614
EED31451.1
O-methyltransferase; [R] COG4798 Predicted methyltransferase.
  
     0.614
EED33597.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.612
EED33341.1
Transporter, OMR family; [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
 
  0.552
EED32757.1
Conserved hypothetical protein.
  
  
  0.534
EED31741.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.528
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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