STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimI[R] COG0456 Acetyltransferases. (156 aa)    
Predicted Functional Partners:
EED32404.1
Conserved hypothetical protein.
       0.799
EED32406.1
Hypothetical protein.
       0.752
argD
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
 0.737
argA_1
Amino-acid N-acetyltransferase; [E] COG1246 N-acetylglutamate synthase and related acetyltransferases; Belongs to the acetyltransferase family. ArgA subfamily.
    
 0.715
EED32403.1
[R] COG1216 Predicted glycosyltransferases.
       0.682
EED31331.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
  
 
 0.675
EED32402.1
Manganese/divalent cation transport protein (nramp); [ER] COG0591 Na+/proline symporter.
       0.487
EED33765.1
P-protein; [E] COG1605 Chorismate mutase.
 
  
  0.476
NOR53_898
Peptidase M22, glycoprotease; [O] COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
  
 
 0.475
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.469
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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