Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED33622.1[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (298 aa)    
Predicted Functional Partners:
ada
ADA regulatory protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.849
uppS
Undecaprenyl pyrophosphate synthetase 1; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.
   
 
  0.580
EED33620.1
Diacylglycerol kinase catalytic domain-containing protein; [I] COG1946 Acyl-CoA thioesterase.
  
    0.547
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
  0.462
azlC
[E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance).
 
     0.430
NOR53_275
Polyprenyl synthetase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
  0.419
ispB
[H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
  0.419
NOR53_743
[H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
  0.419
EED31473.1
[E] COG0747 ABC-type dipeptide transport system, periplasmic component.
     
 0.417
NOR53_421
[E] COG0747 ABC-type dipeptide transport system, periplasmic component.
     
 0.417
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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