EED33965.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EED33965.1

[M] COG1596 Periplasmic protein involved in polysaccharide export. (208 aa)

Predicted Functional Partners:

EED33978.1

0.986

EED33964.1

0.972

EED33960.1

0.960

EED33966.1

0.954

NOR53_910

0.944

NOR53_445

0.924

EED31674.1

0.888

NOR53_731

0.874

EED33962.1

0.870

pal

0.863

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31674.1	EED33964.1	NOR53_3283	NOR53_2169	Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.	Polysaccharide chain length determinant protein; [L] COG0419 ATPase involved in DNA repair.	0.670
EED31674.1	EED33965.1	NOR53_3283	NOR53_2146	Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.888
EED31674.1	EED33966.1	NOR53_3283	NOR53_1339	Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.	ATPase; [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase).	0.402
EED31674.1	EED33978.1	NOR53_3283	NOR53_2195	Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.	Putative UDP-glucose lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	0.802
EED31674.1	NOR53_731	NOR53_3283	NOR53_731	Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.	[G] COG0726 Predicted xylanase/chitin deacetylase.	0.613
EED31674.1	NOR53_910	NOR53_3283	NOR53_910	Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.	Protein-tyrosine kinase; [D] COG0489 ATPases involved in chromosome partitioning.	0.594
EED33960.1	EED33962.1	NOR53_1161	NOR53_1104	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	Uncharacterized protein, PEP-CTERM system associated.	0.906
EED33960.1	EED33964.1	NOR53_1161	NOR53_2169	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	Polysaccharide chain length determinant protein; [L] COG0419 ATPase involved in DNA repair.	0.938
EED33960.1	EED33965.1	NOR53_1161	NOR53_2146	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.960
EED33960.1	EED33966.1	NOR53_1161	NOR53_1339	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	ATPase; [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase).	0.808
EED33960.1	EED33978.1	NOR53_1161	NOR53_2195	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	Putative UDP-glucose lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	0.868
EED33960.1	NOR53_445	NOR53_1161	NOR53_445	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	Phage integrase:Chain length determinant protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.702
EED33960.1	NOR53_731	NOR53_1161	NOR53_731	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	[G] COG0726 Predicted xylanase/chitin deacetylase.	0.943
EED33960.1	NOR53_910	NOR53_1161	NOR53_910	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	Protein-tyrosine kinase; [D] COG0489 ATPases involved in chromosome partitioning.	0.932
EED33962.1	EED33960.1	NOR53_1104	NOR53_1161	Uncharacterized protein, PEP-CTERM system associated.	Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.	0.906
EED33962.1	EED33964.1	NOR53_1104	NOR53_2169	Uncharacterized protein, PEP-CTERM system associated.	Polysaccharide chain length determinant protein; [L] COG0419 ATPase involved in DNA repair.	0.955
EED33962.1	EED33965.1	NOR53_1104	NOR53_2146	Uncharacterized protein, PEP-CTERM system associated.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.870
EED33962.1	EED33966.1	NOR53_1104	NOR53_1339	Uncharacterized protein, PEP-CTERM system associated.	ATPase; [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase).	0.598
EED33962.1	EED33978.1	NOR53_1104	NOR53_2195	Uncharacterized protein, PEP-CTERM system associated.	Putative UDP-glucose lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	0.800
EED33962.1	NOR53_445	NOR53_1104	NOR53_445	Uncharacterized protein, PEP-CTERM system associated.	Phage integrase:Chain length determinant protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.749