STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED33965.1[M] COG1596 Periplasmic protein involved in polysaccharide export. (208 aa)    
Predicted Functional Partners:
EED33978.1
Putative UDP-glucose lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
 
 0.992
EED33964.1
Polysaccharide chain length determinant protein; [L] COG0419 ATPase involved in DNA repair.
 
 0.958
NOR53_910
Protein-tyrosine kinase; [D] COG0489 ATPases involved in chromosome partitioning.
 
 0.951
EED33960.1
Sugar transferase, PEP-CTERM/EpsH1 system associated; [M] COG0438 Glycosyltransferase.
 
 
 0.927
EED33966.1
ATPase; [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase).
 
   0.909
NOR53_445
Phage integrase:Chain length determinant protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 0.891
EED33962.1
Uncharacterized protein, PEP-CTERM system associated.
 
  
  0.885
NOR53_731
[G] COG0726 Predicted xylanase/chitin deacetylase.
 
     0.870
prsK
Putative PEP-CTERM system histidine kinase; [T] COG2205 Osmosensitive K+ channel histidine kinase.
 
     0.835
NOR53_852
O-Antigen Polymerase family protein; [M] COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
  
 0.832
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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