STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED33177.1Type II secretion system protein; [U] COG4962 Flp pilus assembly protein, ATPase CpaF. (373 aa)    
Predicted Functional Partners:
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.792
EED33837.1
Type IV pilus biogenesis protein PilC; [I] COG0657 Esterase/lipase.
  
   
 0.784
gspF_2
General secretion pathway protein F; [NU] COG1459 Type II secretory pathway, component PulF.
  
   
 0.781
gspF_1
General secretion pathway protein F; [NU] COG1459 Type II secretory pathway, component PulF.
  
   
 0.773
EED32219.1
[NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
  
  
 0.595
EED33176.1
Hypothetical protein.
       0.569
pilE
Fimbrial protein PilE (MS11 antigen); [NU] COG4968 Tfp pilus assembly protein PilE; Belongs to the N-Me-Phe pilin family.
  
   
 0.545
EED33175.1
Amidohydrolase domain protein; [R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
       0.448
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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