STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32883.1Amine oxidase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (395 aa)    
Predicted Functional Partners:
NOR53_91
Tyrosine decarboxylase 1; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
  
 
 0.718
EED31062.1
[E] COG1231 Monoamine oxidase.
  
  
  0.646
NOR53_897
[I] COG1562 Phytoene/squalene synthetase.
   
 
 0.635
EED33765.1
P-protein; [E] COG1605 Chorismate mutase.
     
 0.616
EED33595.1
[HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
    
 0.603
EED33335.1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases.
    
 0.603
hepA
RNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
    
 0.599
EED31275.1
Putative helicase; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
    
 0.599
EED32250.1
Type III restriction enzyme, res subunit family; [LKJ] COG0513 Superfamily II DNA and RNA helicases.
    
 0.599
NOR53_689
[V] COG1680 Beta-lactamase class C and other penicillin binding proteins.
 
    0.586
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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