STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32639.1Protein containing DUF88; [S] COG1432 Uncharacterized conserved protein. (254 aa)    
Predicted Functional Partners:
napA_1
[P] COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain.
       0.675
EED32230.1
Putative methyltransferase; [R] COG0220 Predicted S-adenosylmethionine-dependent methyltransferase.
  
  
 0.592
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.592
NOR53_962
[S] COG2983 Uncharacterized conserved protein; Belongs to the UPF0260 family.
       0.569
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
   0.469
EED32637.1
Sulphate transporter; [P] COG0659 Sulfate permease and related transporters (MFS superfamily).
       0.444
EED32636.1
UspA; [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.444
pheT
[J] COG0072 Phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.432
cho
[L] COG0322 Nuclease subunit of the excinuclease complex.
   
   0.424
NOR53_47
Glycosyl transferase, family 2; [M] COG0438 Glycosyltransferase.
    
   0.418
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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