STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bglX[G] COG1472 Beta-glucosidase-related glycosidases. (740 aa)    
Predicted Functional Partners:
celD
Glucan 1,4-beta-glucosidase; [G] COG1472 Beta-glucosidase-related glycosidases.
 
    
0.788
EED31372.1
Glycosyl hydrolase, family 16.
 
 
 0.634
NOR53_998
Putative alpha-galactosidase 2 (Melibiase); [G] COG3345 Alpha-galactosidase.
  
  
 0.579
EED33452.1
Conserved hypothetical protein; [S] COG5523 Predicted integral membrane protein.
 
     0.548
EED33428.1
[G] COG1874 Beta-galactosidase.
 
  
 0.458
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
  
  
 0.445
NOR53_964
Hyaluronidase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
 0.434
NOR53_32
Sucrose phosphorylase; [G] COG0366 Glycosidases.
   
 
 0.432
tesA
acyl-CoA thioesterase I; [E] COG2755 Lysophospholipase L1 and related esterases.
    
 0.426
amiB
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
     
 0.425
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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