NOR53_225 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NOR53_225

[S] COG2841 Uncharacterized protein conserved in bacteria. (81 aa)

Predicted Functional Partners:

NOR53_431

0.892

ccoG

0.833

ppk_1

0.784

EED32344.1

0.734

EED32695.1

0.622

ccoQ

0.609

hemN

0.566

ccoN

0.528

bchE

0.523

NOR53_337

0.501

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED32344.1	EED32695.1	NOR53_3168	NOR53_2086	PvdS; [S] COG2326 Uncharacterized conserved protein.	OmpW family protein; [M] COG3047 Outer membrane protein W.	0.634
EED32344.1	NOR53_225	NOR53_3168	NOR53_225	PvdS; [S] COG2326 Uncharacterized conserved protein.	[S] COG2841 Uncharacterized protein conserved in bacteria.	0.734
EED32344.1	bchE	NOR53_3168	NOR53_1213	PvdS; [S] COG2326 Uncharacterized conserved protein.	Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; [C] COG1032 Fe-S oxidoreductase.	0.503
EED32344.1	ccoG	NOR53_3168	NOR53_1259	PvdS; [S] COG2326 Uncharacterized conserved protein.	Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.	0.448
EED32344.1	ccoN	NOR53_3168	NOR53_2261	PvdS; [S] COG2326 Uncharacterized conserved protein.	[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.	0.416
EED32344.1	hemN	NOR53_3168	NOR53_685	PvdS; [S] COG2326 Uncharacterized conserved protein.	Oxygen-independent coproporphyrinogen III oxidase; [KB] COG1243 Histone acetyltransferase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.561
EED32695.1	EED32344.1	NOR53_2086	NOR53_3168	OmpW family protein; [M] COG3047 Outer membrane protein W.	PvdS; [S] COG2326 Uncharacterized conserved protein.	0.634
EED32695.1	NOR53_225	NOR53_2086	NOR53_225	OmpW family protein; [M] COG3047 Outer membrane protein W.	[S] COG2841 Uncharacterized protein conserved in bacteria.	0.622
EED32695.1	NOR53_431	NOR53_2086	NOR53_431	OmpW family protein; [M] COG3047 Outer membrane protein W.	[T] COG1734 DnaK suppressor protein.	0.587
EED32695.1	bchE	NOR53_2086	NOR53_1213	OmpW family protein; [M] COG3047 Outer membrane protein W.	Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; [C] COG1032 Fe-S oxidoreductase.	0.416
EED32695.1	ccoG	NOR53_2086	NOR53_1259	OmpW family protein; [M] COG3047 Outer membrane protein W.	Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.	0.708
EED32695.1	ccoN	NOR53_2086	NOR53_2261	OmpW family protein; [M] COG3047 Outer membrane protein W.	[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.	0.704
EED32695.1	ccoQ	NOR53_2086	NOR53_1676	OmpW family protein; [M] COG3047 Outer membrane protein W.	[O] COG4736 Cbb3-type cytochrome oxidase, subunit 3.	0.402
EED32695.1	hemN	NOR53_2086	NOR53_685	OmpW family protein; [M] COG3047 Outer membrane protein W.	Oxygen-independent coproporphyrinogen III oxidase; [KB] COG1243 Histone acetyltransferase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.902
EED32695.1	ppk_1	NOR53_2086	NOR53_1690	OmpW family protein; [M] COG3047 Outer membrane protein W.	Polyphosphate kinase 2; [S] COG2326 Uncharacterized conserved protein.	0.634
NOR53_225	EED32344.1	NOR53_225	NOR53_3168	[S] COG2841 Uncharacterized protein conserved in bacteria.	PvdS; [S] COG2326 Uncharacterized conserved protein.	0.734
NOR53_225	EED32695.1	NOR53_225	NOR53_2086	[S] COG2841 Uncharacterized protein conserved in bacteria.	OmpW family protein; [M] COG3047 Outer membrane protein W.	0.622
NOR53_225	NOR53_337	NOR53_225	NOR53_337	[S] COG2841 Uncharacterized protein conserved in bacteria.	TM2 domain containing protein+B7201; [S] COG2314 Predicted membrane protein.	0.501
NOR53_225	NOR53_431	NOR53_225	NOR53_431	[S] COG2841 Uncharacterized protein conserved in bacteria.	[T] COG1734 DnaK suppressor protein.	0.892
NOR53_225	bchE	NOR53_225	NOR53_1213	[S] COG2841 Uncharacterized protein conserved in bacteria.	Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; [C] COG1032 Fe-S oxidoreductase.	0.523