STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED33924.1VCBS protein; [S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain. (3975 aa)    
Predicted Functional Partners:
EED31888.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.871
EED33927.1
Toxin secretion ABC transporter permease and ATP-binding protein; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.655
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 0.654
EED33926.1
HlyD family secretion protein; [M] COG0845 Membrane-fusion protein.
 
  
 0.643
EED33721.1
[J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
 0.555
NOR53_913
Regulatory protein, LuxR; [K] COG2771 DNA-binding HTH domain-containing proteins.
 
     0.533
tesA
acyl-CoA thioesterase I; [E] COG2755 Lysophospholipase L1 and related esterases.
    
  0.499
EED31313.1
Membrane protein with HlyD domain; [M] COG0845 Membrane-fusion protein.
 
    0.496
amiB
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
    
 0.469
EED32547.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin; [O] COG1404 Subtilisin-like serine proteases.
   
  0.436
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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