Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EED34035.1Conserved hypothetical protein. (115 aa)    
Predicted Functional Partners:
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
   
 0.907
EED34033.1
CheB methylesterase/CheR methyltransferase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
  
  0.895
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
   
 0.885
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.885
NOR53_701
Putative sensory box-containing diguanylate cyclase; [T] COG2200 FOG: EAL domain.
    
 0.838
NOR53_690
Hypothetical protein.
   
 0.739
NOR53_559
Diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s); [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins.
 
  
 0.689
EED32335.1
Hypothetical protein; [T] COG2200 FOG: EAL domain; pas:ggdef.
    
 0.565
NOR53_724
Hypothetical protein; [T] COG2200 FOG: EAL domain; pas:ggdef.
    
 0.565
EED34034.1
Response regulator/sensory box/ggdef domain/eal domain protein; [T] COG2200 FOG: EAL domain.
    
 0.544
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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