Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EED32744.1[C] COG3658 Cytochrome b. (226 aa)    
Predicted Functional Partners:
EED32745.1
Cytochrome c, class II; [C] COG3909 Cytochrome c556.
 
    0.803
EED32741.1
[S] COG3453 Uncharacterized protein conserved in bacteria.
       0.788
NOR53_829
Nudix hydrolase; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
       0.776
EED32742.1
Amidohydrolase; [R] COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.773
EED32740.1
Hypothetical protein; [R] COG0730 Predicted permeases.
       0.546
purC
[F] COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; Belongs to the SAICAR synthetase family.
       0.545
EED31324.1
[C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
     
  0.500
EED31323.1
Fumarate reductase flavoprotein subunit; [H] COG0029 Aspartate oxidase.
     
  0.500
EED31322.1
[C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.500
EED32254.1
Conserved hypothetical protein.
  
 0.484
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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