Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EED34009.1Transcriptional regulator, LuxR family; [K] COG2771 DNA-binding HTH domain-containing proteins. (192 aa)    
Predicted Functional Partners:
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
     
 0.755
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
     
 0.660
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
     
 0.660
NOR53_265
Conserved hypothetical protein.
  
     0.580
NOR53_702
Conserved hypothetical protein.
  
 
 0.548
NOR53_748
Conserved hypothetical protein.
  
     0.527
EED32275.1
Metallo-beta-lactamase superfamily protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
  
 
   0.493
NOR53_873
Two component transcriptional regulator, LuxR family; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
   
 0.484
NOR53_913
Regulatory protein, LuxR; [K] COG2771 DNA-binding HTH domain-containing proteins.
   
 0.484
EED34010.1
Hypothetical protein; [E] COG0687 Spermidine/putrescine-binding periplasmic protein; signal peptide prediction.
       0.461
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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