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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED34009.1Transcriptional regulator, LuxR family; [K] COG2771 DNA-binding HTH domain-containing proteins. (192 aa)    
Predicted Functional Partners:
NOR53_702
Conserved hypothetical protein.
  
 
 0.858
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
   
 
 0.780
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
   
 
 0.778
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
   
 
 0.778
NOR53_873
Two component transcriptional regulator, LuxR family; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
 0.601
NOR53_913
Regulatory protein, LuxR; [K] COG2771 DNA-binding HTH domain-containing proteins.
  
 0.601
NOR53_265
Conserved hypothetical protein.
  
     0.580
EED32275.1
Metallo-beta-lactamase superfamily protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
  
 
   0.527
NOR53_748
Conserved hypothetical protein.
  
     0.527
EED34010.1
Hypothetical protein; [E] COG0687 Spermidine/putrescine-binding periplasmic protein; signal peptide prediction.
  
    0.465
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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