Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED33171.1Conserved hypothetical protein. (444 aa)    
Predicted Functional Partners:
EED33170.1
Conserved hypothetical protein.
 
     0.949
EED33172.1
Putative exported protein; [S] COG4315 Uncharacterized protein conserved in bacteria.
 
     0.937
EED33173.1
Hypothetical protein.
       0.773
EED33568.1
[S] COG4315 Uncharacterized protein conserved in bacteria.
 
     0.739
EED32548.1
Conserved hypothetical protein.
  
     0.658
EED33174.1
Hypothetical protein.
       0.631
EED32201.1
[S] COG3165 Uncharacterized protein conserved in bacteria.
     
 0.613
NOR53_69
Pe_pgrs family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.577
EED31540.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.523
EED33435.1
[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
  
  0.512
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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