Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
NOR53_236Secretion protein HlyD; [V] COG1566 Multidrug resistance efflux pump. (385 aa)    
Predicted Functional Partners:
NOR53_160
RND efflux system, outer membrane lipoprotein, NodT; [MU] COG1538 Outer membrane protein.
 
 0.991
EED32098.1
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 0.944
NOR53_328
Transporter, PerM family; [R] COG0628 Predicted permease.
 
    0.938
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 0.926
NOR53_365
Conserved hypothetical protein.
 
     0.906
EED33552.1
Putative multidrug resistance protein; [M] COG0845 Membrane-fusion protein.
  
  
  0.836
EED33101.1
[M] COG0845 Membrane-fusion protein; putative efflux transporterRND family, MFP subunit taxon:351745; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.830
EED32668.1
Multidrug RND transporter, membrane fusion protein (HylD family); [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.820
NOR53_848
Efflux transporter, RND family, MFP subunit, AcrA/E family; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.803
EED32981.1
[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.801
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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