STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_236Secretion protein HlyD; [V] COG1566 Multidrug resistance efflux pump. (385 aa)    
Predicted Functional Partners:
NOR53_160
RND efflux system, outer membrane lipoprotein, NodT; [MU] COG1538 Outer membrane protein.
 
 0.969
NOR53_328
Transporter, PerM family; [R] COG0628 Predicted permease.
 
    0.930
NOR53_365
Conserved hypothetical protein.
 
     0.893
EED32098.1
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 0.777
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 0.760
EED33927.1
Toxin secretion ABC transporter permease and ATP-binding protein; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
 0.707
EED33101.1
[M] COG0845 Membrane-fusion protein; putative efflux transporterRND family, MFP subunit taxon:351745; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
  0.671
EED31327.1
Toxin secretion ABC transporter ATP-binding protein; [CO] COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components.
  
 0.657
EED32668.1
Multidrug RND transporter, membrane fusion protein (HylD family); [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
  0.651
EED33704.1
[MU] COG1538 Outer membrane protein.
   
  0.620
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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