STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED34043.1Transcriptional regulator, GntR family; [K] COG2188 Transcriptional regulators. (260 aa)    
Predicted Functional Partners:
EED34040.1
Isochorismatase hydrolase; [Q] COG1335 Amidases related to nicotinamidase.
 
    0.776
EED34041.1
[G] COG0726 Predicted xylanase/chitin deacetylase; overlaps another CDS with the same product name.
 
   
 0.742
EED34042.1
[G] COG0726 Predicted xylanase/chitin deacetylase; overlaps another CDS with the same product name.
 
   
 0.710
EED32847.1
Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
  
 0.709
EED33367.1
Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
  
 0.709
NOR53_618
[E] COG3741 N-formylglutamate amidohydrolase.
 
 
 0.705
EED31664.1
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
    
  0.642
EED32506.1
Isoaspartyl dipeptidase; [F] COG0044 Dihydroorotase and related cyclic amidohydrolases.
  
  
 0.618
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
 
   
 0.585
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.549
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.