STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED33228.1[V] COG2367 Beta-lactamase class A. (334 aa)    
Predicted Functional Partners:
EED33229.1
Conserved hypothetical protein; [S] COG3949 Uncharacterized membrane protein.
 
     0.842
EED33230.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.628
EED33227.1
D-aminoacylase domain protein; [F] COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
     0.606
EED34017.1
[R] COG2366 Protein related to penicillin acylase.
  
  
  0.473
NOR53_778
Hypothetical protein.
       0.472
dacA
D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5; [M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
  0.456
NOR53_750
[M] COG2951 Membrane-bound lytic murein transglycosylase B.
    
  0.453
EED33232.1
[L] COG3666 Transposase and inactivated derivatives.
       0.432
NOR53_131
[V] COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
  
 0.405
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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