Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED31153.1Conserved hypothetical protein. (609 aa)    
Predicted Functional Partners:
EED33460.1
Conserved hypothetical protein.
 
     0.786
EED32317.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.770
EED31606.1
Conserved hypothetical protein.
  
     0.707
EED33584.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.688
EED31083.1
Conserved hypothetical protein.
  
     0.650
EED31152.1
Putative epoxide hydrolase 2; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.636
NOR53_578
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.540
EED31107.1
Carbohydrate-selective porin, OprB family.
  
     0.532
EED33556.1
Conserved hypothetical protein.
  
     0.523
EED31739.1
Conserved hypothetical protein; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
     0.504
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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