Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NOR53_242[G] COG0726 Predicted xylanase/chitin deacetylase. (334 aa)    
Predicted Functional Partners:
NOR53_217
Conserved hypothetical protein.
       0.768
EED34040.1
Isochorismatase hydrolase; [Q] COG1335 Amidases related to nicotinamidase.
 
     0.469
NOR53_248
Conserved hypothetical protein.
       0.428
NOR53_493
Hydantoinase/oxoprolinase family protein; [EQ] COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
  
     0.422
EED33212.1
2-dehydropantoate 2-reductase; [H] COG1893 Ketopantoate reductase.
 
     0.420
EED31475.1
Formamidase; [C] COG2421 Predicted acetamidase/formamidase.
  
     0.416
uraH
Hydroxyisourate hydrolase; [R] COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
  0.407
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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