STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31436.1[Q] COG1233 Phytoene dehydrogenase and related proteins. (494 aa)    
Predicted Functional Partners:
NOR53_897
[I] COG1562 Phytoene/squalene synthetase.
 
 
 0.930
crtC
Hydroxyneurosporene synthase (CrtC).
 
 
 0.893
EED31437.1
Conserved hypothetical protein.
       0.786
EED32371.1
Hydroxyneurosporene methyltransferase (O-methylase); [QR] COG0500 SAM-dependent methyltransferases.
 
 
 0.737
bchF
2-vinyl bacteriochlorophyllide hydratase.
  
  
 0.693
EED32397.1
Geranylgeranyl reductase; [C] COG0644 Dehydrogenases (flavoproteins).
 
 
 0.668
EED32383.1
Putative photosynthetic complex assembly protein 2.
  
    0.654
bchZ
Chlorophyllide reductase subunit Z; [C] COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.
 
  
 0.648
EED32385.1
Photosynthetic complex assembly protein.
  
    0.646
pufL
Photosynthetic reaction center L subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the reaction center PufL/M/PsbA/D family.
  
    0.645
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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