STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31464.1[L] COG2818 3-methyladenine DNA glycosylase. (219 aa)    
Predicted Functional Partners:
EED31467.1
[C] COG2863 Cytochrome c553.
       0.773
EED31466.1
[P] COG1858 Cytochrome c peroxidase.
       0.773
EED31465.1
Putative Cytochrome c subfamily; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.773
polA
DNA polymerase I superfamily protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.576
EED31468.1
Putative transcriptional regulatory protein, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
       0.496
EED33828.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.439
NOR53_460
[S] COG5345 Uncharacterized protein conserved in bacteria.
  
     0.417
NOR53_966
Conserved hypothetical protein.
  
     0.417
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.