STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31155.1Putative beta-carotene hydroxylase; [I] COG3239 Fatty acid desaturase. (309 aa)    
Predicted Functional Partners:
EED32850.1
Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.
  
 
 0.824
NOR53_537
Linalool 8-monooxygenase; [Q] COG2124 Cytochrome P450.
 
  
 0.703
EED33188.1
Linalool 8-monooxygenase; [Q] COG2124 Cytochrome P450.
 
  
 0.642
EED32493.1
Hypothetical protein; [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
  
  
  0.623
EED31154.1
Hypothetical protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins; putative helix-turn-helix- domain containing proteinAraC type taxon:351348.
 
     0.620
EED32669.1
Putative lipase 4 (Triacylglycerol lipase 4); [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
  
  
  0.600
EED31510.1
[I] COG1398 Fatty-acid desaturase.
  
 0.550
EED33391.1
Ribonuclease Z; [R] COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III.
  
     0.536
NOR53_515
Ferredoxin; [C] COG2871 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF.
 
 
 0.519
NOR53_566
Conserved hypothetical protein; [O] COG0625 Glutathione S-transferase.
  
     0.510
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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