EED31494.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EED31494.1

LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes. (255 aa)

Predicted Functional Partners:

tolR

0.925

EED31888.1

0.900

tolB

0.869

tolQ

0.854

EED34033.1

0.741

EED32059.1

0.716

NOR53_774

0.703

EED33892.1

0.702

EED33058.1

0.684

EED31860.1

0.684

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31494.1	EED31860.1	NOR53_2494	NOR53_3336	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	[U] COG0848 Biopolymer transport protein.	0.684
EED31494.1	EED31888.1	NOR53_2494	NOR53_2910	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	0.900
EED31494.1	EED32059.1	NOR53_2494	NOR53_3206	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	Putative conserved hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain.	0.716
EED31494.1	EED33058.1	NOR53_2494	NOR53_1478	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	[U] COG0848 Biopolymer transport protein.	0.684
EED31494.1	EED33892.1	NOR53_2494	NOR53_2037	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.702
EED31494.1	EED34033.1	NOR53_2494	NOR53_1346	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	CheB methylesterase/CheR methyltransferase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	0.741
EED31494.1	NOR53_774	NOR53_2494	NOR53_774	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	Anti-sigma-factor antagonist; [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.703
EED31494.1	tolB	NOR53_2494	NOR53_2661	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.869
EED31494.1	tolQ	NOR53_2494	NOR53_2741	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.854
EED31494.1	tolR	NOR53_2494	NOR53_2895	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.925
EED31860.1	EED31494.1	NOR53_3336	NOR53_2494	[U] COG0848 Biopolymer transport protein.	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	0.684
EED31860.1	tolQ	NOR53_3336	NOR53_2741	[U] COG0848 Biopolymer transport protein.	Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.938
EED31888.1	EED31494.1	NOR53_2910	NOR53_2494	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	0.900
EED32059.1	EED31494.1	NOR53_3206	NOR53_2494	Putative conserved hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain.	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	0.716
EED32059.1	EED33892.1	NOR53_3206	NOR53_2037	Putative conserved hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain.	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.529
EED32059.1	NOR53_774	NOR53_3206	NOR53_774	Putative conserved hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain.	Anti-sigma-factor antagonist; [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.768
EED33058.1	EED31494.1	NOR53_1478	NOR53_2494	[U] COG0848 Biopolymer transport protein.	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	0.684
EED33058.1	tolQ	NOR53_1478	NOR53_2741	[U] COG0848 Biopolymer transport protein.	Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.942
EED33892.1	EED31494.1	NOR53_2037	NOR53_2494	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.	0.702
EED33892.1	EED32059.1	NOR53_2037	NOR53_3206	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Putative conserved hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain.	0.529