Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31487.1Putative endoribonuclease L-PSP; [J] COG0251 Putative translation initiation inhibitor, yjgF family. (126 aa)    
Predicted Functional Partners:
EED34040.1
Isochorismatase hydrolase; [Q] COG1335 Amidases related to nicotinamidase.
  
 
 0.778
EED33765.1
P-protein; [E] COG1605 Chorismate mutase.
  
 
 0.592
EED33240.1
Esterase YbfF; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
   
 
 0.552
EED33259.1
Hydrolase, alpha/beta fold family; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
   
 
 0.552
EED31832.1
Hypothetical protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold.
   
 
 0.552
EED31488.1
[E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.
       0.531
EED33520.1
Putative threonine dehydratase biosynthetic; [E] COG0498 Threonine synthase.
 
 
 0.513
EED33395.1
Endoribonuclease L-PSP; [J] COG0251 Putative translation initiation inhibitor, yjgF family.
  
     0.511
tdcB
Threonine dehydratase, catabolic; [E] COG0031 Cysteine synthase.
 
 
 0.499
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
   0.483
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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