deaD protein (gamma proteobacterium NOR53) - STRING interaction network

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deaD

Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (609 aa)

Predicted Functional Partners:

pnp

0.918

cafA

0.874

rpmD

0.814

rplJ

0.812

rrmJ

0.807

rplW

0.801

sun

0.788

rplV

0.788

rpsC

0.767

NOR53_389

0.755

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NOR53_389	deaD	NOR53_389	NOR53_252	RIO1//family protein; [T] COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain.	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.755
NOR53_389	rpsC	NOR53_389	NOR53_2	RIO1//family protein; [T] COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.911
NOR53_389	rrmJ	NOR53_389	NOR53_2857	RIO1//family protein; [T] COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain.	Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.	0.799
cafA	deaD	NOR53_1804	NOR53_252	Hypothetical protein; [J] COG1530 Ribonucleases G and E; ibonuclease G.	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.874
cafA	pnp	NOR53_1804	NOR53_2503	Hypothetical protein; [J] COG1530 Ribonucleases G and E; ibonuclease G.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.992
deaD	NOR53_389	NOR53_252	NOR53_389	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	RIO1//family protein; [T] COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain.	0.755
deaD	cafA	NOR53_252	NOR53_1804	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Hypothetical protein; [J] COG1530 Ribonucleases G and E; ibonuclease G.	0.874
deaD	pnp	NOR53_252	NOR53_2503	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.918
deaD	rplJ	NOR53_252	NOR53_238	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	[J] COG0244 Ribosomal protein L10.	0.812
deaD	rplV	NOR53_252	NOR53_408	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.788
deaD	rplW	NOR53_252	NOR53_383	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.801
deaD	rpmD	NOR53_252	NOR53_289	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	[J] COG1841 Ribosomal protein L30/L7E.	0.814
deaD	rpsC	NOR53_252	NOR53_2	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.767
deaD	rrmJ	NOR53_252	NOR53_2857	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.	0.807
deaD	sun	NOR53_252	NOR53_3542	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.788
pnp	cafA	NOR53_2503	NOR53_1804	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Hypothetical protein; [J] COG1530 Ribonucleases G and E; ibonuclease G.	0.992
pnp	deaD	NOR53_2503	NOR53_252	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Cold-shock deAd-box protein a; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.918
pnp	rplJ	NOR53_2503	NOR53_238	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	[J] COG0244 Ribosomal protein L10.	0.851
pnp	rplV	NOR53_2503	NOR53_408	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.748
pnp	rplW	NOR53_2503	NOR53_383	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.896

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