STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31506.1Lytic transglycosylase, catalytic; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (190 aa)    
Predicted Functional Partners:
amiB
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
 
 
 0.721
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.687
EED32053.1
[S] COG1652 Uncharacterized protein containing LysM domain.
 
   
 0.621
EED32223.1
Type IV pilus secretin PilQ; [U] COG4964 Flp pilus assembly protein, secretin CpaC.
 
    0.603
EED31507.1
Transcriptional regulator, LuxR family; [K] COG2771 DNA-binding HTH domain-containing proteins.
       0.583
NOR53_256
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.571
fliI
Flagellar protein export ATPase FliI; [C] COG0056 F0F1-type ATP synthase, alpha subunit.
  
  
 0.561
EED33004.1
[NU] COG3215 Tfp pilus assembly protein PilZ.
  
     0.552
fliE
[NU] COG1677 Flagellar hook-basal body protein.
  
  
 0.551
EED32221.1
Type 4 fimbrial biogenesis protein PilO; [NU] COG3167 Tfp pilus assembly protein PilO.
  
     0.545
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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