Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EED31506.1Lytic transglycosylase, catalytic; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (190 aa)    
Predicted Functional Partners:
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.725
EED32053.1
[S] COG1652 Uncharacterized protein containing LysM domain.
  
   
 0.630
amiB
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
 
 
 0.612
EED32223.1
Type IV pilus secretin PilQ; [U] COG4964 Flp pilus assembly protein, secretin CpaC.
 
    0.602
EED31507.1
Transcriptional regulator, LuxR family; [K] COG2771 DNA-binding HTH domain-containing proteins.
       0.590
EED33004.1
[NU] COG3215 Tfp pilus assembly protein PilZ.
  
     0.552
EED32221.1
Type 4 fimbrial biogenesis protein PilO; [NU] COG3167 Tfp pilus assembly protein PilO.
  
     0.545
EED32219.1
[NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
  
     0.539
EED33113.1
Transglutaminase domain protein; [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
  
     0.477
EED33126.1
LysM domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.459
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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