STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_254Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins. (248 aa)    
Predicted Functional Partners:
NOR53_426
Putative Helix-turn-helix, AraC type regulator.
       0.773
EED32226.1
[E] COG0070 Glutamate synthase domain 3.
    
  0.646
EED33454.1
Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.
   
 
  0.608
EED33246.1
Hypothetical protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins; helix-turn-helix, AraC type.
  
   0.506
EED31823.1
AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.504
NOR53_427
L-carnitine dehydratase/bile acid-inducible protein F; [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
  
    0.490
NOR53_55
[I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.486
EED31455.1
Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
  
     0.400
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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