Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED31469.1Hypothetical protein. (42 aa)    
Predicted Functional Partners:
EED31468.1
Putative transcriptional regulatory protein, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
       0.581
EED31471.1
[M] COG4775 Outer membrane protein/protective antigen OMA87.
       0.418
EED31470.1
Conserved hypothetical protein, putative; [S] COG2911 Uncharacterized protein conserved in bacteria.
       0.418
EED31472.1
Hypothetical protein.
       0.413
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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