Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED31184.1Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator. (197 aa)    
Predicted Functional Partners:
EED31185.1
Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
    0.619
EED32850.1
Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.
  
 
 0.568
NOR53_190
[C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
  
 0.500
EED33738.1
NADH:flavin oxidoreductase/nadh oxidase family protein; [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
  
 0.500
EED33577.1
Transcriptional regulatory protein; [K] COG1733 Predicted transcriptional regulators.
  
     0.483
EED32624.1
[K] COG1733 Predicted transcriptional regulators.
  
     0.445
EED31856.1
Transcriptional regulator, HxlR family; [K] COG1733 Predicted transcriptional regulators.
  
     0.432
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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