Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED31437.1Conserved hypothetical protein. (249 aa)    
Predicted Functional Partners:
EED31436.1
[Q] COG1233 Phytoene dehydrogenase and related proteins.
       0.794
EED31439.1
Conserved domain protein.
 
     0.724
EED34050.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.702
EED31061.1
TonB-dependent receptor, plug; Overlaps another CDS with the same product name.
  
     0.688
EED31438.1
[Q] COG2124 Cytochrome P450.
 
     0.654
EED34054.1
Methyltransferase type 12; [QR] COG0500 SAM-dependent methyltransferases.
  
     0.625
EED34057.1
[S] COG5470 Uncharacterized conserved protein.
  
     0.607
EED31435.1
Conserved hypothetical protein.
       0.509
EED32310.1
[E] COG2866 Predicted carboxypeptidase.
  
     0.445
EED31067.1
FAD binding domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases.
  
     0.428
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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