Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EED31507.1Transcriptional regulator, LuxR family; [K] COG2771 DNA-binding HTH domain-containing proteins. (281 aa)    
Predicted Functional Partners:
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
     
 0.755
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
     
 0.660
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
     
 0.660
NOR53_192
Hypothetical protein.
 
     0.639
glnA_2
[E] COG0174 Glutamine synthetase.
 
     0.630
NOR53_265
Conserved hypothetical protein.
  
     0.624
NOR53_69
Pe_pgrs family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.619
EED34037.1
Conserved hypothetical protein.
  
     0.616
EED31615.1
Conserved hypothetical protein.
  
     0.613
EED32548.1
Conserved hypothetical protein.
  
     0.601
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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