STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31356.1Glutathione-dependent formaldehyde-activating, GFA; [S] COG3791 Uncharacterized conserved protein. (136 aa)    
Predicted Functional Partners:
holA
[L] COG1466 DNA polymerase III, delta subunit.
       0.775
lptE
Lipoprotein, putative; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
       0.769
leuS
[J] COG0060 Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.752
mxaF
Methanol dehydrogenase protein, large subunit; [C] COG2010 Cytochrome c, mono- and diheme variants.
     
 0.693
NOR53_636
Alcohol dehydrogenase (acceptor); [S] COG1520 FOG: WD40-like repeat.
     
 0.693
EED32508.1
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.528
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
       0.508
tlyC
Magnesium and cobalt efflux protein CorC; [R] COG0517 FOG: CBS domain.
       0.508
ybeY
Putative metalloprotease H16_A0526; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.508
EED31349.1
PhoH family protein; [T] COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase.
       0.508
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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