Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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[Homology]
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lys1_4Saccharopine dehydrogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (413 aa)    
Predicted Functional Partners:
EED31627.1
Putative calcium binding signal peptide protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     
  0.622
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.539
EED33680.1
Conserved hypothetical protein; [NT] COG0840 Methyl-accepting chemotaxis protein.
    
  0.531
NOR53_199
Putative secreted proteincontaining von Willebrand factor (vWF) type A domain taxon:283942.
    
  0.531
phaF
Polyhydroxyalkanoate synthesis protein PhaF; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.531
EED31863.1
TonB system biopolymer transport component; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; overlaps another CDS with the same product name.
    
  0.531
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
  0.531
rnfC
Electron transport complex protein RnfC; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.531
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
  
  0.526
ldcC
[E] COG1982 Arginine/lysine/ornithine decarboxylases.
    
  0.462
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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