EED31455.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EED31455.1

Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain. (306 aa)

Predicted Functional Partners:

EED32226.1

0.646

EED33246.1

0.637

EED33454.1

0.608

EED32847.1

0.598

NOR53_883

0.597

EED33367.1

0.541

EED31139.1

0.520

EED31823.1

0.402

NOR53_254

0.400

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31139.1	EED31455.1	NOR53_2588	NOR53_2697	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	0.520
EED31139.1	EED31823.1	NOR53_2588	NOR53_3675	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.551
EED31139.1	EED32226.1	NOR53_2588	NOR53_2965	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	[E] COG0070 Glutamate synthase domain 3.	0.646
EED31139.1	EED32847.1	NOR53_2588	NOR53_1500	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.427
EED31139.1	EED33246.1	NOR53_2588	NOR53_1325	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	Hypothetical protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins; helix-turn-helix, AraC type.	0.549
EED31139.1	EED33454.1	NOR53_2588	NOR53_2282	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	0.608
EED31455.1	EED31139.1	NOR53_2697	NOR53_2588	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.520
EED31455.1	EED31823.1	NOR53_2697	NOR53_3675	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.402
EED31455.1	EED32226.1	NOR53_2697	NOR53_2965	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	[E] COG0070 Glutamate synthase domain 3.	0.646
EED31455.1	EED32847.1	NOR53_2697	NOR53_1500	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.598
EED31455.1	EED33246.1	NOR53_2697	NOR53_1325	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	Hypothetical protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins; helix-turn-helix, AraC type.	0.637
EED31455.1	EED33367.1	NOR53_2697	NOR53_1547	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.541
EED31455.1	EED33454.1	NOR53_2697	NOR53_2282	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	Putative Phosphate acetyl/butyryl transferase subfamily; [C] COG0281 Malic enzyme.	0.608
EED31455.1	NOR53_254	NOR53_2697	NOR53_254	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.400
EED31455.1	NOR53_883	NOR53_2697	NOR53_883	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.597
EED31823.1	EED31139.1	NOR53_3675	NOR53_2588	AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.551
EED31823.1	EED31455.1	NOR53_3675	NOR53_2697	AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	0.402
EED31823.1	EED32226.1	NOR53_3675	NOR53_2965	AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[E] COG0070 Glutamate synthase domain 3.	0.646
EED31823.1	EED32847.1	NOR53_3675	NOR53_1500	AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.664
EED31823.1	EED33367.1	NOR53_3675	NOR53_1547	AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.450