Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NOR53_27Conserved domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (215 aa)    
Predicted Functional Partners:
EED32053.1
[S] COG1652 Uncharacterized protein containing LysM domain.
  
   0.940
NOR53_120
Mannosyl-3-phosphoglycerate phosphatase family protein; [R] COG0561 Predicted hydrolases of the HAD superfamily.
   
    0.750
EED31358.1
OsmC-like protein; [O] COG1764 Predicted redox protein, regulator of disulfide bond formation.
   
    0.695
NOR53_189
Purine catabolism protein PucB; [R] COG2068 Uncharacterized MobA-related protein.
       0.529
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
  0.511
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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