STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31462.1Putative oxidoreductase family protein; [Q] COG1233 Phytoene dehydrogenase and related proteins. (528 aa)    
Predicted Functional Partners:
NOR53_897
[I] COG1562 Phytoene/squalene synthetase.
 
 
 0.774
EED31463.1
Omega-amino acid--pyruvate aminotransferase; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.603
EED31461.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.541
EED32397.1
Geranylgeranyl reductase; [C] COG0644 Dehydrogenases (flavoproteins).
  
 
 0.427
chlD
Protoporphyrin IX Magnesium chelatase subunit ChlD; [H] COG1239 Mg-chelatase subunit ChlI.
  
 
 0.425
crtC
Hydroxyneurosporene synthase (CrtC).
  
 
 0.419
EED31062.1
[E] COG1231 Monoamine oxidase.
  
  
 0.406
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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