Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED31086.1Conserved hypothetical protein. (173 aa)    
Predicted Functional Partners:
EED31087.1
Hypothetical protein.
       0.686
EED31092.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.650
NOR53_297
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.635
NOR53_328
Transporter, PerM family; [R] COG0628 Predicted permease.
  
     0.635
EED31083.1
Conserved hypothetical protein.
 
     0.603
EED31078.1
Conserved hypothetical protein.
  
     0.573
EED31085.1
Hypothetical protein.
       0.553
NOR53_831
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.446
EED31084.1
[M] COG3764 Sortase (surface protein transpeptidase).
 
     0.439
EED33505.1
[S] COG2930 Uncharacterized conserved protein.
  
     0.414
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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