Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31471.1[M] COG4775 Outer membrane protein/protective antigen OMA87. (610 aa)    
Predicted Functional Partners:
EED31470.1
Conserved hypothetical protein, putative; [S] COG2911 Uncharacterized protein conserved in bacteria.
 
 0.999
EED31472.1
Hypothetical protein.
       0.762
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
  
  0.573
EED33165.1
Hydroxylase; [R] COG3324 Predicted enzyme related to lactoylglutathione lyase.
   
    0.517
ribE
[H] COG0307 Riboflavin synthase alpha chain.
     
  0.458
ribF
Riboflavin biosynthesis protein RibF; [H] COG0196 FAD synthase; Belongs to the ribF family.
     
  0.458
EED31473.1
[E] COG0747 ABC-type dipeptide transport system, periplasmic component.
       0.425
EED31469.1
Hypothetical protein.
       0.418
NOR53_231
[G] COG1109 Phosphomannomutase.
  
    0.407
EED33880.1
Arabinose 5-phosphate isomerase; [M] COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains.
  
    0.405
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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