STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31453.1Putative oxidoreductase family protein; [Q] COG1233 Phytoene dehydrogenase and related proteins. (514 aa)    
Predicted Functional Partners:
EED31454.1
[Q] COG1233 Phytoene dehydrogenase and related proteins.
 
    
0.811
NOR53_897
[I] COG1562 Phytoene/squalene synthetase.
 
 
 0.783
EED31452.1
Oxidoreductase, molybdopterin-binding; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.546
EED32397.1
Geranylgeranyl reductase; [C] COG0644 Dehydrogenases (flavoproteins).
  
 
 0.427
chlD
Protoporphyrin IX Magnesium chelatase subunit ChlD; [H] COG1239 Mg-chelatase subunit ChlI.
  
 
 0.425
crtC
Hydroxyneurosporene synthase (CrtC).
  
 
 0.419
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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