EED31231.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EED31231.1

Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives. (103 aa)

Predicted Functional Partners:

EED31229.1

0.792

EED31240.1

0.775

EED31230.1

0.727

EED31187.1

0.564

EED31245.1

0.544

EED31988.1

0.429

NOR53_692

0.426

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31187.1	EED31231.1	NOR53_2654	NOR53_2755	ISPpu14, transposase Orf3; [L] COG3436 Transposase and inactivated derivatives.	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	0.564
EED31187.1	EED31245.1	NOR53_2654	NOR53_2617	ISPpu14, transposase Orf3; [L] COG3436 Transposase and inactivated derivatives.	[L] COG3436 Transposase and inactivated derivatives.	0.773
EED31229.1	EED31230.1	NOR53_2849	NOR53_2448	Integrase, catalytic region; [L] COG2826 Transposase and inactivated derivatives, IS30 family.	Hypothetical protein.	0.462
EED31229.1	EED31231.1	NOR53_2849	NOR53_2755	Integrase, catalytic region; [L] COG2826 Transposase and inactivated derivatives, IS30 family.	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	0.792
EED31229.1	EED31240.1	NOR53_2849	NOR53_2814	Integrase, catalytic region; [L] COG2826 Transposase and inactivated derivatives, IS30 family.	Transposase; [L] COG2801 Transposase and inactivated derivatives.	0.555
EED31230.1	EED31229.1	NOR53_2448	NOR53_2849	Hypothetical protein.	Integrase, catalytic region; [L] COG2826 Transposase and inactivated derivatives, IS30 family.	0.462
EED31230.1	EED31231.1	NOR53_2448	NOR53_2755	Hypothetical protein.	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	0.727
EED31231.1	EED31187.1	NOR53_2755	NOR53_2654	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	ISPpu14, transposase Orf3; [L] COG3436 Transposase and inactivated derivatives.	0.564
EED31231.1	EED31229.1	NOR53_2755	NOR53_2849	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	Integrase, catalytic region; [L] COG2826 Transposase and inactivated derivatives, IS30 family.	0.792
EED31231.1	EED31230.1	NOR53_2755	NOR53_2448	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	Hypothetical protein.	0.727
EED31231.1	EED31240.1	NOR53_2755	NOR53_2814	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	Transposase; [L] COG2801 Transposase and inactivated derivatives.	0.775
EED31231.1	EED31245.1	NOR53_2755	NOR53_2617	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	[L] COG3436 Transposase and inactivated derivatives.	0.544
EED31231.1	EED31988.1	NOR53_2755	NOR53_3160	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	0.429
EED31231.1	NOR53_692	NOR53_2755	NOR53_692	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	DNA internalization-related competence protein ComEC/Rec2; [R] COG0658 Predicted membrane metal-binding protein.	0.426
EED31240.1	EED31229.1	NOR53_2814	NOR53_2849	Transposase; [L] COG2801 Transposase and inactivated derivatives.	Integrase, catalytic region; [L] COG2826 Transposase and inactivated derivatives, IS30 family.	0.555
EED31240.1	EED31231.1	NOR53_2814	NOR53_2755	Transposase; [L] COG2801 Transposase and inactivated derivatives.	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	0.775
EED31245.1	EED31187.1	NOR53_2617	NOR53_2654	[L] COG3436 Transposase and inactivated derivatives.	ISPpu14, transposase Orf3; [L] COG3436 Transposase and inactivated derivatives.	0.773
EED31245.1	EED31231.1	NOR53_2617	NOR53_2755	[L] COG3436 Transposase and inactivated derivatives.	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	0.544
EED31988.1	EED31231.1	NOR53_3160	NOR53_2755	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	0.429
NOR53_692	EED31231.1	NOR53_692	NOR53_2755	DNA internalization-related competence protein ComEC/Rec2; [R] COG0658 Predicted membrane metal-binding protein.	Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.	0.426