Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EED31235.1Conserved hypothetical protein; [E] COG1748 Saccharopine dehydrogenase and related proteins. (215 aa)    
Predicted Functional Partners:
EED31234.1
[L] COG2963 Transposase and inactivated derivatives.
       0.675
EED31302.1
Putative RecF/RecN/SMC N terminal domain; [D] COG1196 Chromosome segregation ATPases.
  
  
  0.668
EED33271.1
Phage-related protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.641
EED31627.1
Putative calcium binding signal peptide protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     
  0.622
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.539
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
  
  0.536
EED33680.1
Conserved hypothetical protein; [NT] COG0840 Methyl-accepting chemotaxis protein.
    
  0.531
ldcC
[E] COG1982 Arginine/lysine/ornithine decarboxylases.
 
  
  0.531
NOR53_199
Putative secreted proteincontaining von Willebrand factor (vWF) type A domain taxon:283942.
    
  0.531
phaF
Polyhydroxyalkanoate synthesis protein PhaF; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.531
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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