STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31537.1Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold. (339 aa)    
Predicted Functional Partners:
EED32850.1
Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.
     
 0.684
EED31538.1
Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.
       0.682
fadB
Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
    
  0.501
fadA
acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
       0.482
EED33573.1
Voltage-gated potassium channel beta subunit; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
  
 
  0.460
NOR53_866
Aldo-keto reductase yakc (nadp+); [R] COG0656 Aldo/keto reductases, related to diketogulonate reductase.
  
 
  0.460
NOR53_937
Mandelate racemase/muconate lactonizing enzyme family protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
    
 0.437
EED31539.1
TonB dependent receptor; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.426
NOR53_560
Retinol dehydrogenase 12; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
  0.409
EED33585.1
[S] COG5476 Uncharacterized conserved protein.
  
     0.408
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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