EED31537.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EED31537.1

Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold. (339 aa)

Predicted Functional Partners:

EED31538.1

0.682

EED32850.1

0.577

fadB

0.485

fadA

0.482

EED31539.1

0.426

EED33585.1

0.408

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31537.1	EED31538.1	NOR53_2787	NOR53_2638	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.	0.682
EED31537.1	EED31539.1	NOR53_2787	NOR53_2603	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	TonB dependent receptor; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	0.426
EED31537.1	EED32850.1	NOR53_2787	NOR53_1610	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.	0.577
EED31537.1	EED33585.1	NOR53_2787	NOR53_1077	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	[S] COG5476 Uncharacterized conserved protein.	0.408
EED31537.1	fadA	NOR53_2787	NOR53_2495	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	0.482
EED31537.1	fadB	NOR53_2787	NOR53_2711	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.485
EED31538.1	EED31537.1	NOR53_2638	NOR53_2787	Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	0.682
EED31538.1	fadA	NOR53_2638	NOR53_2495	Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.	acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	0.435
EED31538.1	fadB	NOR53_2638	NOR53_2711	Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.	Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.478
EED31539.1	EED31537.1	NOR53_2603	NOR53_2787	TonB dependent receptor; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	0.426
EED32850.1	EED31537.1	NOR53_1610	NOR53_2787	Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	0.577
EED32850.1	fadA	NOR53_1610	NOR53_2495	Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.	acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	0.402
EED32850.1	fadB	NOR53_1610	NOR53_2711	Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.	Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.861
EED33585.1	EED31537.1	NOR53_1077	NOR53_2787	[S] COG5476 Uncharacterized conserved protein.	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	0.408
fadA	EED31537.1	NOR53_2495	NOR53_2787	acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	0.482
fadA	EED31538.1	NOR53_2495	NOR53_2638	acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.	0.435
fadA	EED32850.1	NOR53_2495	NOR53_1610	acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.	0.402
fadA	fadB	NOR53_2495	NOR53_2711	acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.	Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.998
fadB	EED31537.1	NOR53_2711	NOR53_2787	Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.	0.485
fadB	EED31538.1	NOR53_2711	NOR53_2638	Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.	0.478