Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31257.1Putative signal transduction protein with Nacht domain; [T] COG5635 Predicted NTPase (NACHT family). (1071 aa)    
Predicted Functional Partners:
EED33046.1
[K] COG0846 NAD-dependent protein deacetylases, SIR2 family.
   
   0.811
EED32019.1
Silent information regulator protein Sir2; [K] COG0846 NAD-dependent protein deacetylases, SIR2 family.
   
   0.811
ribB
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.510
NOR53_60
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
     
  0.510
EED31258.1
Hypothetical protein.
       0.491
EED31546.1
Conserved domain protein; [K] COG1396 Predicted transcriptional regulators.
 
   
 0.421
EED31302.1
Putative RecF/RecN/SMC N terminal domain; [D] COG1196 Chromosome segregation ATPases.
 
     0.405
EED33271.1
Phage-related protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.404
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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