EED31395.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EED31395.1

Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase. (375 aa)

Predicted Functional Partners:

NOR53_215

0.985

EED31396.1

0.954

EED31684.1

0.937

EED33682.1

0.932

NOR53_690

0.919

putA_1

0.918

NOR53_559

0.873

EED32335.1

0.871

NOR53_724

0.871

NOR53_789

0.869

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31395.1	EED31396.1	NOR53_2865	NOR53_2790	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	0.954
EED31395.1	EED31684.1	NOR53_2865	NOR53_3341	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	0.937
EED31395.1	EED32335.1	NOR53_2865	NOR53_2979	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Hypothetical protein; [T] COG2200 FOG: EAL domain; pas:ggdef.	0.871
EED31395.1	EED33682.1	NOR53_2865	NOR53_2196	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.932
EED31395.1	NOR53_215	NOR53_2865	NOR53_215	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.985
EED31395.1	NOR53_559	NOR53_2865	NOR53_559	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s); [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins.	0.873
EED31395.1	NOR53_690	NOR53_2865	NOR53_690	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Hypothetical protein.	0.919
EED31395.1	NOR53_724	NOR53_2865	NOR53_724	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Hypothetical protein; [T] COG2200 FOG: EAL domain; pas:ggdef.	0.871
EED31395.1	NOR53_789	NOR53_2865	NOR53_789	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	[T] COG2199 FOG: GGDEF domain.	0.869
EED31395.1	putA_1	NOR53_2865	NOR53_558	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Bifunctional PutA protein; [C] COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.	0.918
EED31396.1	EED31395.1	NOR53_2790	NOR53_2865	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.954
EED31396.1	EED31684.1	NOR53_2790	NOR53_3341	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	0.928
EED31396.1	EED32335.1	NOR53_2790	NOR53_2979	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	Hypothetical protein; [T] COG2200 FOG: EAL domain; pas:ggdef.	0.642
EED31396.1	EED33682.1	NOR53_2790	NOR53_2196	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	[T] COG0642 Signal transduction histidine kinase.	0.848
EED31396.1	NOR53_215	NOR53_2790	NOR53_215	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	[T] COG0642 Signal transduction histidine kinase.	0.872
EED31396.1	NOR53_559	NOR53_2790	NOR53_559	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	Diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s); [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins.	0.774
EED31396.1	NOR53_690	NOR53_2790	NOR53_690	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	Hypothetical protein.	0.721
EED31396.1	NOR53_724	NOR53_2790	NOR53_724	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	Hypothetical protein; [T] COG2200 FOG: EAL domain; pas:ggdef.	0.642
EED31684.1	EED31395.1	NOR53_3341	NOR53_2865	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.937
EED31684.1	EED31396.1	NOR53_3341	NOR53_2790	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	0.928