Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31327.1Toxin secretion ABC transporter ATP-binding protein; [CO] COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components. (585 aa)    
Predicted Functional Partners:
EED31326.1
[M] COG0845 Membrane-fusion protein.
 
 0.980
EED31325.1
Outer membrane component of multidrug efflux pump; [MU] COG1538 Outer membrane protein.
 
 
 0.958
EED33926.1
HlyD family secretion protein; [M] COG0845 Membrane-fusion protein.
 
 0.942
EED32098.1
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
  
 
 0.831
EED33369.1
[P] COG2375 Siderophore-interacting protein.
   
  0.737
NOR53_698
[P] COG2375 Siderophore-interacting protein.
   
  0.737
EED33721.1
[J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
 
  
 0.697
msbA
Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Belongs to the ABC transporter superfamily. Lipid exporter (TC 3.A.1.106) family.
 
 
  0.680
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 
 0.641
EED31764.1
Transporter, MFP family; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.629
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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