Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED31470.1Conserved hypothetical protein, putative; [S] COG2911 Uncharacterized protein conserved in bacteria. (1262 aa)    
Predicted Functional Partners:
EED31471.1
[M] COG4775 Outer membrane protein/protective antigen OMA87.
 
 0.999
yaeT
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 0.928
EED31472.1
Hypothetical protein.
       0.762
EED31685.1
AsmA family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
 0.722
EED33297.1
[M] COG2982 Uncharacterized protein involved in outer membrane biogenesis.
     
 0.608
EED33039.1
[M] COG2982 Uncharacterized protein involved in outer membrane biogenesis.
     
 0.608
EED32671.1
Conserved domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     
 0.600
pilV
[NU] COG4967 Tfp pilus assembly protein PilV.
  
     0.545
NOR53_71
[NU] COG4966 Tfp pilus assembly protein PilW.
  
     0.513
pilY
[NU] COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1.
 
     0.490
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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