Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31111.1Steryl-sulfatase; [P] COG3119 Arylsulfatase A and related enzymes. (500 aa)    
Predicted Functional Partners:
atsA
[P] COG3119 Arylsulfatase A and related enzymes.
  
  
  0.820
EED33711.1
Choline-sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.
 
  
 
0.511
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
  0.495
EED33465.1
[P] COG3119 Arylsulfatase A and related enzymes.
 
  
 
0.493
EED33392.1
[P] COG3119 Arylsulfatase A and related enzymes.
  
  
 
0.464
NOR53_867
[P] COG3119 Arylsulfatase A and related enzymes.
  
  
 
0.464
EED32123.1
Tetratricopeptide TPR_2; [R] COG0457 FOG: TPR repeat.
 
     0.444
rhlB
ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.
    
  0.431
EED32507.1
ATP-dependent rna helicase, dead box family; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
    
  0.431
rhlE
ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
    
  0.431
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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